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NGS Software Tools - Visualisation


Complex Analysis Workflow | Quality Control & Data Trimming | Assembling & Binning | Alignment & Mapping | Data Analysis | Variant Analysis & Variant Calling | Data Bases & Data Base Search | Visualisation


Visualisation

BamView

BamView is a free interactive display of read alignments in BAM data files.

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Circos

Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

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EaglEnsembl

EaglEnsembl (EagleGenomics) provides a powerful tool for visualizing and searching genome data. The flexible database structure and extensive programmatic interfaces make it the genome browser of choice. Eagle has a collaboration agreement with EMBL-EBI and the Wellcome Trust Sanger Institute, to provide Eagle with access to the development team and know-how behind the Ensembl project.
Source: Eagle Genomics

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Genesifter

Genesifter accesses easy-to-use statistical, visualization and annotation tools for Microarray and Next Generation Sequencing data.

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GGPLOT

GGPLOT is a software for ngs data analysis and visualization.

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Gambit

Gambit is a cross-platform GUI (graphical user interface) application for sequence visualization and analysis.

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GenomeView

GenomeView (workflow) is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.
Source: Genomeview

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GraphPad Prism

GraphPad Prism can be used for building of graphs from NGS data.

Integrative Genomics Viewer (IGV)

The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.
Source: Broadinstitute

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JMP Genomics

JMP Genomics Whether you’re working in agriculture, pharmacogenomics, biotechnology, or other areas of genomic research, JMP Genomics provides comprehensive tools to analyze rare and common variants, detect differential expression patterns, understand NGS data, discover reliable biomarker profiles, and incorporate pathway information into your analysis workflows.
Source: JMP

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LookSeq

LookSeq is a web-based application for alignment visualization, browsing and analysis of genome sequence data.

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MagicViewer

MagicViewer in an integrated solution for next generation sequencing data visualization and genetic variation detection and annotation.

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MGRAST

MGRAST version 3 provides a variety of tools to visualize data, perform statistical analyses, and visualize data with respect to analysis outputs. Here we provide some pointers to consider when using any of the visualization and/or statistical analysis tools.

Source: MG-RAST

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Tablet

Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies.

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UCSC Genome Browser

The UCSC Genome Browser is developed and maintained by the Genome Bioinformatics Group, a cross-departmental team within the UC Santa Cruz Genomics Institute at the University of California Santa Cruz (UCSC). If you have feedback or questions concerning the tools or data on this website, feel free to contact us on our public mailing list.
The Genome Browser zooms and scrolls over chromosomes, showing the work of annotators worldwide. The Gene Sorter shows expression, homology and other information on groups of genes that can be related in many ways. Blat quickly maps your sequence to the genome. The Table Browser provides convenient access to the underlying database. VisiGene lets you browse through a large collection of in situ mouse and frog images to examine expression patterns. Genome Graphs allows you to upload and display genome-wide data sets.
Source: UCSC Genome Bioinformatics

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